The regex search used was similar to that described previously by Zeeberg and colleagues, with the added screen for dates in other formats (e.g. Official gene symbols from Ensembl version 82, accessed November 2015, were obtained for Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Escherichia coli, Gallus gallus, Homo sapiens, Mus musculus, Oryza sativa and Saccharomyces cerevisiae. If the first 20 rows of a column contained five or more gene symbols, then it was suspected to be a list of gene symbols, and then a regular expression (regex) search of the entire column was applied to identify gene symbol errors. Each column of data in the tsv file was screened for the presence of gene symbols. Each sheet within the Excel file was converted to a separate tsv file. Excel files (.xls and.xlsx suffixes) were converted to tabular separated files (tsv) with ssconvert (v1.12.9). We downloaded and screened supplementary files from 18 journals published between 20 using a suite of shell scripts. Our aim here is to raise awareness of the problem. Inadvertent gene symbol conversion is problematic because these supplementary files are an important resource in the genomics community that are frequently reused. This suggests that gene name errors continue to be a problem in supplementary files accompanying articles. Since that report, we have uncovered further instances where gene symbols were converted to dates in supplementary data of recently published papers (e.g. Furthermore, RIKEN identifiers were described to be automatically converted to floating point numbers (i.e. For example, gene symbols such as SEPT2 (Septin 2) and MARCH1 are converted by default to ‘2-Sep’ and ‘1-Mar’, respectively. The other aspects were already covered by answers above.įillable.pdf (30.The problem of Excel software (Microsoft Corp., Redmond, WA, USA) inadvertently converting gene symbols to dates and floating-point numbers was originally described in 2004. You should consider to add something like "(concerning export to pdf-forms)" Your question mainly is about export to pdf. You can open it with your reader, and most likely change the fields. The attached example was made "on the fly" with LibO, and the fields were filled after the export to pdf using "Foxit Reader". If you want to do so, you will need to know a lot more than you have asked for. Forms are basically made to connect to a database. You or your clients need to use one supporting the filling. The next step will be done by any brand of pdf software ( a "Reader"). OOXML formatted files, you should be better off with LibreOffice. If you need compatibility to MS sellware or rentware, and in specific if you also need to work with. I am looking for a tool that can create fillable PDF forms from a MS Word or Excel file. Jennifer Murphy wrote:Are OpenOffice and LibreOffice two different products? How do they differ? OpenOffice releases tiny little updates once a year and recently it had to fix updates because they were broken because there are not even enough voluteers to test the entire product on each supported platform.Ĭontrary to that, LibreOffice can get on someones nerves because its quality management is not good enough for the pace of development and quite obviously, there is a group of people who constantly mess up the menues with never ending "good ideas". SInce 2015 it has become clear that OpenOffice is dying under that roof because all relevant developers and other volunteers switched over to the more attractive project. OpenOffice found a new home under the roof of the Apache foundation. OpenOffice 3.3 and LibreOffice 3.3 were identical products except from the blue/green branding. LibreOffice was forked from OpenOffice 3.3 because OpenOffice was about to become homeless.
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